| Lineups found Starting lineup changes since last game |
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| September 2005 |
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| Coach Petržela since 24-Dec-02 |
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 16-Jul to 18-Jul Anyukov Yellow cards ban |
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 20-Jul to 27-Jul Kozhanov Minor knock |
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| 23-Jul to 13-Nov Križanac Ankle |
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| 23-Jul to 03-Aug Arshavin Broken hand |
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| 23-Jul to 03-Aug Kerzhakov Left ankle recurrent injury |
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| 23-Jul to 03-Aug Anyukov Left ankle ligaments |
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| 28-Aug to 28-Sep Škrtel Injured |
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| 15-Sep to 22-Sep Poškus Achilles tendon |
| M.1 | 15-Sep | | AEK | | 0-0 | lineup not confirmed |
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| 17-Sep to 19-Sep Spivak Yellow cards ban |
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| 24-Sep to 19-Oct Poškus Achilles tendon |
| M.2 | 29-Sep | away | AEK | | 0-1 | lineup not confirmed |
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| October 2005 |
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| 01-Oct to 03-Oct Vjestica Yellow cards ban |
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| 01-Oct to 03-Oct Hagen, E Yellow cards ban |
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| 02-Oct to 02-Dec Sirl Left knee lateral ligaments tear |
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| 15-Oct to 17-Oct Denisov Yellow cards ban |
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| 20-Oct to 10-Nov Mareš Thigh biceps |
| M.3 | 20-Oct | | Guimaraes | | 2-1 | lineup not confirmed |
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| November 2005 |
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| 30-Oct to 15-Nov Flachbart Minor knock |
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| 30-Oct to 15-Nov Spivak Gastrocnemius muscle |
| M.4 | 03-Nov | away | Bolton | | 1-0 | lineup not confirmed |
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| 05-Nov to 07-Nov Flachbart Yellow cards ban |
| M.5 | 24-Nov | | Sevilla | | 2-1 | lineup not confirmed |
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| December 2005 |
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| M.6 | 01-Dec | away | Beşiktaş | | 1-1 | lineup not confirmed |
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| February 2006 |
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| M.8 | 15-Feb | away | Rosenborg | | 0-2 | 4-4-2 | |
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| 20-Feb to 10-Mar Mareš Injured |
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| 23-Feb to 10-Apr Čontofalský Injured |
| M.9 | 23-Feb | | Rosenborg | | 2-1 | lineup not confirmed |
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| March 2006 |
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| 03-Mar to 05-Mar Radimov Yellow cards ban |
| M.10 | 09-Mar | away | Marseille | | 0-1 | 4-4-2 | *** Repeat 11 *** |
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| M.11 | 16-Mar | | Marseille | | 1-1 | 4-4-2 | In:Vjestica, Gorshkov, Out:Škrtel, Spivak, |
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| 22-Mar to 29-Mar Hagen, E Chill |
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| 26-Mar to 02-Apr Trifonov Minor knock |
| M.12 | 30-Mar | away | Sevilla | | 4-1 | 5-3-2 | In:Škrtel, Sumu'ki, Out:Vjestica, Gorshkov, |
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| April 2006 |
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| 05-Apr to 07-Apr Hagen, E Red card ban |
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| 05-Apr to 07-Apr Arshavin Red card and unsporting behaviour ban - 1/3 |
| M.13 | 06-Apr | | Sevilla | | 1-1 | 4-1-3-2 | In:Mareš, YM Hyun, Vlasov, Poškus, Out:Hagen, Sumu'ki, Denisov, Arshavin, |
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| 12-Apr to 29-Apr Denisov Injured |
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| 14-Apr to 16-Apr Hagen, E Red card & kicking the opponent ban - 1/3 |
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| 15-Apr to 25-Apr Radimov Achilles tendon |
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| 22-Apr to 24-Apr Hagen, E Red card & kicking the opponent ban - 2/3 |
| May 2006 |
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| Coach Borovička since 04-May-06 |
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| 29-Apr to 01-May Hagen, E Red card & kicking the opponent ban - 3/3 |
| Color References: GK, DF, DM, MF, FW , Unknown Pos |