| 26-Aug-06 MX Apertura 2006 - M.4 | Grupos | Querétaro | 2-1 | Santos | | |
| 11-Feb-07 MX Clausura 2007 - M.4 | Grupos | Santos | 0-0 | Querétaro | | |
| 27-Feb-10 MX Clausura 2010 - M.8 | Grupos | Querétaro | 1-1 | Santos | | Rodríguez Moreno |
| 11-Sep-10 MX Apertura 2010 - M.7 | Grupos | Querétaro | 5-2 | Santos | | Flores Rodríguez |
| 19-Feb-11 MX Clausura 2011 - M.7 | Grupos | Santos | 0-2 | Querétaro | | Rodríguez Moreno |
| 08-Oct-11 MX Apertura 2011 - M.12 | Grupos | Querétaro | 1-3 | Santos | | García Orozco |
| 24-Mar-12 MX Clausura 2012 - M.12 | Grupos | Santos | 2-0 | Querétaro | | Ramirez Ulloa |
| 06-Oct-12 MX Apertura 2012 - M.12 | Fase Regular | Querétaro | 1-1 | Santos | | Ayala Ramírez |
| 30-Mar-13 MX Clausura 2013 - M.12 | Fase Regular | Santos | 1-1 | Querétaro | | Ramos, Cesar |
| 03-Aug-13 MX Apertura 2013 - M.4 | Fase Regular | Santos | 2-0 | Querétaro | | Zanjuampa |
| 24-Nov-13 MX Apertura 2013 - M.18 | Cuartos de Final | Querétaro | 2-3 | Santos | | Arellano Nieves |
| 01-Dec-13 MX Apertura 2013 - M.19 | Cuartos de Final | Santos | 3-1 | Querétaro | | Delgadillo Haro |
| 24-Jan-14 MX Clausura 2014 - M.4 | Fase Regular | Querétaro | 0-0 | Santos | | Flores Rodríguez |
| 09-Aug-14 MX Apertura 2014 - M.4 | Fase Regular | Santos | 2-3 | Querétaro | | Barajas Anzures |
| 30-Jan-15 MX Clausura 2015 - M.4 | Fase Regular | Querétaro | 0-1 | Santos | | Perez Duran |
| 28-May-15 MX Clausura 2015 - M.22 | Finales | Santos | 5-0 | Querétaro | | Peñaloza |
| 31-May-15 MX Clausura 2015 - M.23 | Finales | Querétaro | 3-0 | Santos | | Chacon Gutierrez |
| 11-Aug-15 MX Apertura 2015 - M.4 | Fase Regular | Querétaro | 1-2 | Santos | | Macias Romo |
| 29-Jan-16 MX Clausura 2016 - M.4 | Fase Regular | Santos | 2-0 | Querétaro | | Hérnandez Gómez |
| 01-Oct-16 MX Apertura 2016 - M.12 | Fase Regular | Querétaro | 1-1 | Santos | | Peñaloza |
| 02-Apr-17 MX Clausura 2017 - M.12 | Fase Regular | Santos | 1-0 | Querétaro | | Hérnandez Gómez |
| 21-Oct-17 MX Apertura 2017 - M.14 | Fase Regular | Querétaro | 1-2 | Santos | | Ramos, Cesar |
| 13-Mar-18 Copa MX Cl 2018 - M.8 | Cuartos de Final | Santos | 1-0 | Querétaro | | Ortíz Nava |
| 08-Apr-18 MX Cl Sub 20 2018 - M.14 | Fase Regular | Santos | 3-0 | Querétaro | | Canales Sanchez |
| 08-Apr-18 MX Clausura 2018 - M.14 | Fase Regular | Santos | 3-0 | Querétaro | | Guerrero Ramírez |
| 04-Nov-18 MX Apertura 2018 - M.15 | Fase Regular | Querétaro | 2-1 | Santos | | |
| 21-Apr-19 MX Clausura 2019 - M.15 | Fase Regular | Santos | 2-1 | Querétaro | | |
| 29-Oct-19 MX Apertura 2019 - M.16 | Fase Regular | Santos | 1-0 | Querétaro | | Rojas Castillo |
| 12-Apr-20 MX Clausura 2020 - M.13 | Fase Regular | Querétaro | - | Santos | | |
| 30-Aug-20 MX Apertura 2020 - M.7 | Fase Regular | Santos | 2-1 | Querétaro | | Guerrero Ramírez |
| 11-Apr-21 MX Clausura 2021 - M.14 | Fase Regular | Querétaro | 1-0 | Santos | | Hérnandez Gómez |
| 08-May-21 MX Clausura 2021 - M.18 | Reclasificacion | Santos | 5-0 | Querétaro | | Hérnandez Gómez |
| 30-Oct-21 MX Apertura 2021 - M.16 | Fase Regular | Querétaro | 2-3 | Santos | | Perez Duran |
| 16-Apr-22 MX Clausura 2022 - M.14 | Fase Regular | Santos | 1-1 | Querétaro | | Ramos, Cesar |
| 10-Sep-22 MX Apertura 2022 - M.14 | Fase Regular | Querétaro | 3-3 | Santos | | Santander Aguirre |
| 23-Apr-23 MX Clausura 2023 - M.16 | Fase Regular | Santos | 0-2 | Querétaro | | Camacho Peregrina |
| 02-Jul-23 MX Apertura 2023 - M.1 | Fase Regular | Santos | 0-2 | Querétaro | | Quirarte Contreras |
| 01-Mar-24 MX Clausura 2024 - M.10 | Fase Regular | Querétaro | 0-1 | Santos | | González Veles |
| 08-Nov-24 MX Apertura 2024 - M.17 | Fase Regular | Querétaro | 3-2 | Santos | | Macias Romo |
| 13-Apr-25 MX Clausura 2025 - M.15 | Fase Regular | Santos | - | Querétaro | | |
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