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| First Stage |
| S.Luqueño 0 - Peñarol 0 09-Aug-16 16-Aug-16 Peñarol 1 - S.Luqueño 1 |
| R.Potosí 3 - U.C. 1 09-Aug-16 17-Aug-16 U.C. 1 - R.Potosí 1 |
| CD Lara 1 - Junior 3 09-Aug-16 16-Aug-16 Junior 2 - CD Lara 1 |
| Fénix 1 - Cerro 0 09-Aug-16 17-Aug-16 Cerro 2 - Fénix 0 |
| Universit 0 - Emelec 3 09-Aug-16 16-Aug-16 Emelec 3 - Universit 1 |
| DIM 1 - Católica 1 10-Aug-16 17-Aug-16 Católica 0 - DIM 1 |
| Sol 1 - J.Wilsman 1 10-Aug-16 18-Aug-16 J.Wilsman 1 - Sol 1 |
| Barcelona 1 - Zamora 1 10-Aug-16 18-Aug-16 Zamora 1 - Barcelona 1 |
| U. Conce 2 - Bolivar 0 10-Aug-16 16-Aug-16 Bolivar 3 - U. Conce 0 |
| Wanderers 0 - OHiggins 0 10-Aug-16 16-Aug-16 OHiggins 0 - Wanderers 0 |
| Tolima 0 - La Guaira 0 11-Aug-16 17-Aug-16 La Guaira 1 - Tolima 0 |
| Anztegui 2 - Huancayo 1 11-Aug-16 18-Aug-16 Huancayo 1 - Anztegui 0 |
| Palestino 1 - Libertad 0 11-Aug-16 18-Aug-16 Libertad 0 - Palestino 3 |
| Aucas 2 - Cusco 1 11-Aug-16 17-Aug-16 Cusco 1 - Aucas 0 |
| Municipal 0 - ANacional 5 11-Aug-16 17-Aug-16 ANacional 1 - Municipal 0 |
| Blooming 1 - Colonia 0 11-Aug-16 17-Aug-16 Colonia 1 - Blooming 0 |
| Second Stage |
| Blooming 0 - Junior 2 23-Aug-16 14-Sep-16 Junior 1 - Blooming 1 |
| Banfield 2 - S.Lorenzo 0 23-Aug-16 13-Sep-16 S.Lorenzo 4 - Banfield 1 |
| La Guaira 4 - Emelec 2 23-Aug-16 14-Sep-16 Emelec 0 - La Guaira 0 |
| Figuei se 4 - Flamengo 2 24-Aug-16 31-Aug-16 Flamengo 3 - Figuei se 1 |
| DIM 3 - S.Luqueño 0 24-Aug-16 15-Sep-16 S.Luqueño 2 - DIM 0 |
| Sta Cruz 0 - Sport 0 24-Aug-16 31-Aug-16 Sport 0 - Sta Cruz 1 |
| Cusco 2 - Palestino 2 24-Aug-16 15-Sep-16 Palestino 1 - Cusco 0 |
| Estud. LP 1 - Belgrano 0 24-Aug-16 15-Sep-16 Belgrano 2 - Estud. LP 0 |
| Cerro 6 - R.Potosí 0 24-Aug-16 15-Sep-16 R.Potosí 0 - Cerro 1 |
| Bolivar 1 - ANacional 1 24-Aug-16 13-Sep-16 ANacional 1 - Bolivar 0 |
| Lanús 0 - Indepte 2 25-Aug-16 14-Sep-16 Indepte 1 - Lanús 0 |
| Sol 1 - Huancayo 0 25-Aug-16 15-Sep-16 Huancayo 1 - Sol 1 |
| Vitória 2 - Coritiba 1 25-Aug-16 31-Aug-16 Coritiba 1 - Vitória 0 |
| Zamora 0 - Wanderers 1 25-Aug-16 14-Sep-16 Wanderers 1 - Zamora 0 |
| Cuiabá 1 - Chapecoe 0 25-Aug-16 31-Aug-16 Chapecoe 3 - Cuiabá 1 |
| Round of 16 |
| Sol 1 - ANacional 1 20-Sep-16 27-Sep-16 ANacional 2 - Sol 0 |
| Indepte 0 - Chapecoe 0 21-Sep-16 28-Sep-16 Chapecoe 0 - Indepte 0 |
| DIM 2 - Sta Cruz 0 21-Sep-16 28-Sep-16 Sta Cruz 3 - DIM 1 |
| Palestino 0 - Flamengo 1 21-Sep-16 28-Sep-16 Flamengo 1 - Palestino 2 |
| Wanderers 0 - Junior 0 21-Sep-16 28-Sep-16 Junior 0 - Wanderers 0 |
| Coritiba 1 - Belgrano 2 21-Sep-16 28-Sep-16 Belgrano 1 - Coritiba 2 |
| S.Lorenzo 2 - La Guaira 1 22-Sep-16 29-Sep-16 La Guaira 0 - S.Lorenzo 2 |
| Santa Fe 2 - Cerro 0 22-Sep-16 29-Sep-16 Cerro 4 - Santa Fe 1 |
| Quarter-finals |
| DIM 0 - Cerro 0 18-Oct-16 25-Oct-16 Cerro 2 - DIM 0 |
| Junior 1 - Chapecoe 0 19-Oct-16 26-Oct-16 Chapecoe 3 - Junior 0 |
| Coritiba 1 - ANacional 1 19-Oct-16 26-Oct-16 ANacional 3 - Coritiba 1 |
| S.Lorenzo 2 - Palestino 0 20-Oct-16 27-Oct-16 Palestino 1 - S.Lorenzo 0 |
| Semi-finals |
| Cerro 1 - ANacional 1 01-Nov-16 24-Nov-16 ANacional 0 - Cerro 0 |
| S.Lorenzo 1 - Chapecoe 1 02-Nov-16 23-Nov-16 Chapecoe 0 - S.Lorenzo 0 |
| Final |
| ANacional - Chapecoe 30-Nov-16 07-Dec-16 Chapecoe - ANacional |
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